Our Publications

The below list contains our research publications, followed by Dileep’s previous publications.

  1. Ajit Kumar Singh*, Ketul Saharan*, Somanath Baral, Dileep Vasudevan. 2022. The plant nucleoplasmin AtFKBP43 needs its extended arms for histone interaction. bioRxiv 489347.
  2. Aritreyee Datta*, Shaikh Nausad Hossain*, Chinmayee Mohapatra#, Dileep Vasudevan#2022.  Structural insights into proteins from White spot syndrome virus: perspectives on structure-based anti-viral strategies. Reviews in Aquaculture 2022: 1-12.
  3. Ajit Kumar Singh*, Ketul Saharan*, Somanath Baral, Sheng Luan, Dileep Vasudevan2022. Crystal packing reveals rapamycin-mediated homodimerization of an FK506-binding domain. International Journal of Biological Macromolecules 206: 670-80.
  4. Ruchir C. Bobde*, Ketul Saharan*, Somanath Baral, Surajit Gandhi, Archana Samal, Rajivgandhi Sundaram, Ashish Kumar, Ajit Kumar Singh, Aritreyee Datta, Dileep Vasudevan. 2021In vitro characterization of histone chaperones using analytical, pull-down and chaperoning assays. Journal of Visualized Experiments [JoVE] 63218.
  5. Shyla Gopalakrishnan, Soumya K. Uma, Gayathri Mohan, Amrutha Mohan, Geetha Shanmugam, Vineeth T.V. Kumar, Sreekumar J, Sivakumar K. Chandrika, Dileep Vasudevan, Sai R.C. Nori, Shijulal N. Sathi, Sanil George and Tessy T. Maliekal. 2021. SSTP1, a host defense peptide, exploits the immunomodulatory IL6 pathway to induce apoptosis in cancer cells. Frontiers in Immunology 12: 740620.
  6. Premlata Kumari*, Rajivgandhi Sundaram*, Kodavati Manohar*, Dileep Vasudevan#, Narottam Acharya#2021. Interdomain connecting loop and J loop structures determine cross-species compatibility of PCNA. Journal of Biological Chemistry 297(1): 100911.
  7. Rajivgandhi Sundaram, Kodavati Manohar, Shraddheya Kumar Patel, Narottam Acharya#, Dileep Vasudevan#. 2021. Structural analyses of PCNA from the fungal pathogen Candida albicans identify three regions with species-specific conformations. FEBS Letters 595(9): 1328-49.
  8. Sunanda Mallick*, Ashish Kumar*, Hiren Dodia, Cyrus Alexander, Dileep Vasudevan, Tushar K. Beuria. 2021. Biochemical characterization of an E. coli cell division factor FtsE shows ATPase cycles similar to the NBDs of ABC-transporters. Bioscience Reports 41(1): BSR20203034.
  9. Manas K. Jagdev, Jagneshwar Dandapat, Dileep Vasudevan. 2021. Recombinant expression, purification and SAXS analysis of Arabidopsis thaliana ClpC1. International Journal of Biological Macromolecules 167: 1273-80.
  10. Vipul Panchal*, Sushil Kumar*, Shaikh Nausad Hossain#, Dileep Vasudevan#. 2021. Structure analysis of thymidylate synthase from white spot syndrome virus reveals WSSV-specific structural elements. International Journal of Biological Macromolecules 167: 1168-75.
  11. Sunil K. Raghav, Arup Ghosh, ..…. Dileep Vasudevan, Amol R. Suryawanshi, Rupesh Dash, Shantibhusan Senapati, Tushar K. Beuria, Rajeeb K. Swain, Soma Chattopadhyay S, Gulam H. Syed, Anshuman Dixit, Punit Prasad, Sanghamitra Pati, Ajay Parida. 2020. Analysis of Indian SARS- CoV-2 genomes reveals prevalence of D614G mutation in Spike protein eliciting increase in interaction with TMPRSS2 and virus infectivity. Frontiers in Microbiology 11: 594928.
  12. Rajivgandhi Sundaram, Dileep Vasudevan. 2020. Structural basis of nucleosome recognition and modulation. BioEssays 42(9): 1900234.
  13. Ajit K. Singh, Aritreyee Datta, Jobichen Chacko, Sheng Luan, Dileep Vasudevan. 2020. AtFKBP53: a chimeric histone chaperone with functional nucleoplasmin and PPIase domains. Nucleic Acids Research 48(3): 1531–50.
  14. Ashish Kumar, Dileep Vasudevan. 2020. Structure-function relationship of H2A-H2B specific plant histone chaperones. Cell Stress and Chaperones 25(1): 1-17.
  15. Voddu Suresh*, Rajivgandhi Sundaram*, Pujarini Dash*, Surendra C. Sabat, Debasish Mohapatra, Sneha Mohanty, Dileep Vasudevan#, Shantibhusan Senapati#. 2019. Macrophage migration inhibitory factor of Syrian golden hamster shares structural and functional similarity with human counterpart and promotes pancreatic cancer. Scientific Reports 9(1): 15507.
  16. Supriya Borah, Dileep Vasudevan, Rajeeb Kumar Swain. 2019. C-type lectin family XIV members and angiogenesis. Oncology Letters 18(4): 3954-62.
  17. Ashish Kumar, Ajit K. Singh, Ruchir C. Bobde, Dileep Vasudevan. 2019. Structural characterization of Arabidopsis thaliana NAP1-Related Protein 2 (AtNRP2) and comparison with its homolog AtNRP1. Molecules 24(12) pii: E2258.
  18. Santhosh Gatreddi, Vijaykumar Pillalamarri, Dileep Vasudevan, Anthony Addlagatta, Insaf Ahmed Qureshi. 2019. Unraveling structural insights of ribokinase from Leishmania donovani. International Journal of Biological Macromolecules 136: 253-65.
  19. Pujarini Dash*, Rajivgandhi Sundaram*, Voddu Suresh*, Surendra Chandra Sabat, Debasish Mohapatra, Sneha Mohanty, Dileep Vasudevan#, Shantibhusan Senapati#. 2018. Macrophage migration inhibitory factor (MIF) of Syrian golden hamster (Mesocricetus auratus) has similar structure and function as human MIF and promotes pancreatic tumor growth in vivo. bioRxiv 449629. [pre-print article]
  20. Chinmayee Mohapatra, Manas K. Jagdev, Dileep Vasudevan. 2017. Arabidopsis ClpD N-terminal domain is highly divergent from ClpC1. XXIV IUCr Congress Abstract. Acta Crystallographica A A73 A2: C246.
  21. Dileep Vasudevan, Manas K. Jagdev, Chinmayee Mohapatra. 2017. Structural basis of mycobacterial inhibition by natural products targeting ClpC1. XXIV IUCr Congress Abstract. Acta Crystallographica A A73 A2: C228.
  22. Biswamaitree Subhadarshanee*, Abhinav Mohanty*, Manas K. Jagdev, Dileep Vasudevan, Rabindra Kumar Behera. 2017. Surface charge-dependent separation of modified and hybrid ferritin in native PAGE: impact of lysine 104. Biochimica et Biophysica Acta – Proteins and Proteomics 1865(10): 1267-73.
  23. Chinmayee Mohapatra*, Manas K. Jagdev*, Dileep Vasudevan. 2017. Crystal structures reveal N-terminal Domain of Arabidopsis thaliana ClpD to be highly divergent from that of ClpC1. Scientific Reports 7: 44366.
  24. Dileep Vasudevan*, Gayathri Gopalan*, Ashish Kumar, Veder J. Garcia, Sheng Luan, Kunchithapadam Swaminathan. 2015. Plant immunophilins: A review of their structure-function relationship. Biochimica et Biophysica Acta – General Subjects 1850(10): 2145-58.

  1. Dileep Vasudevan, Srinivasa P S Rao, Christian G Noble. 2013. Structural basis of mycobacterial inhibition by Cyclomarin A. Journal of Biological Chemistry 288(43): 30883-91.
  2. Dileep Vasudevan*, Aigen Fu*, Sheng Luan, Kunchithapadam Swaminathan. 2012. Crystal structure of Arabidopsis thaliana cyclophilin 38 reveals a previously uncharacterized immunophilin fold and a possible autoinhibitory mechanism. The Plant Cell 24(6): 2666-74.
  3. Eugene YD Chua*, Dileep Vasudevan*, Gabriela E Davey, Bin Wu, Curt A Davey. 2012. The mechanics behind DNA sequence-dependent properties of the nucleosome. Nucleic Acids Research 40(13): 6338-52.
  4. Dileep Vasudevan, Eugene YD Chua, Curt A Davey. 2010. Crystal structures of nucleosome core particles containing the ‘601’ strong positioning sequence. Journal of Molecular Biology 403(1): 1-10.
  5. Ong S Michelle*, Dileep Vasudevan*, Curt A Davey. 2010. Divalent metal- & High Mobility Group N protein-dependent nucleosome stability and conformation. Journal of Nucleic Acids 2010: 143890.
  6. Bin Wu*, Mohideen A Kareem*, Dileep Vasudevan, Curt A Davey. 2010. Structural insight into the sequence-dependence of nucleosome positioning. Structure 18(4): 528-36.
  7. Ou Li, Dileep Vasudevan, Curt A Davey, Peter Droge. 2006. High-level expression of DNA architectural factor HMGA2 and its association with nucleosomes in human embryonic stem cells. Genesis 44(11): 523-9.
  8. Dileep Vasudevan, Gayathri Gopalan, Zengyong He, Sheng Luan, Kunchithapadam Swaminathan. 2005. Expression, purification, crystallization & preliminary X-ray diffraction analysis of Arabidopsis thaliana cyclophilin 38. Acta Crystallographica F 61(12): 1087-9.
  9. Dileep V, Kumar HS, Kumar Y, Nishibuchi M, Karunasagar I, Karunasagar I. 2003. Application of polymerase chain reaction for detection of Vibrio parahaemolyticus associated with tropical seafood and coastal environment. Letters in Applied Microbiology 36(6): 423-7.

[* Co-first authors] [# Co-corresponding authors]